Genodedup

GenoDedup is an algorithm that integrates efficient similarity-based deduplication and specialized delta-encoding for genome sequencing data. It increases data reduction gains and restores data faster than the generic compressors used in practice (e.g., GZIP), while approaching the reduction gains to the ones from specialized tools for sequencing data (e.g., SPRING).

Team @ LASIGE: Vinicius Cogo and Alysson Bessani.